Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs62056069 chr16:89912000 C/T 0.000182 173 25.87 23.37 36.37 KM Plot
PCPG rs62056070 chr16:89913164 C/T 0.000206 170 25.87 24.1 36.37 KM Plot
PCPG rs62056087 chr16:89920383 C/A 0.000185 172 25.87 23.37 36.37 KM Plot
PCPG rs62056091 chr16:89930414 G/A 0.000214 171 25.77 22.63 36.37 KM Plot
PCPG rs62056096 chr16:89933306 C/T 0.000214 171 25.77 22.63 36.37 KM Plot
PCPG rs62056099 chr16:89939327 G/A 0.000191 170 25.77 23.37 36.37 KM Plot
PCPG rs62056100 chr16:89939753 C/T 0.000196 174 25.87 20.2 36.37 KM Plot
PCPG rs62056102 chr16:89941438 T/C 0.000194 174 25.87 20.17 36.37 KM Plot
PCPG rs62056103 chr16:89942781 G/A 0.000211 173 25.77 20.2 36.37 KM Plot
PCPG rs62056110 chr16:89946388 A/C 0.000157 176 25.77 21.5 36.37 KM Plot
PCPG rs62056560 chr16:90148930 G/T 8.74E-9 176 25.87 20.2 6.62 KM Plot
PCPG rs62070320 chr16:89573689 A/G 0.000276 174 27.6 25.28 19.2 KM Plot
PCPG rs62070324 chr16:89583067 G/A 0.000192 177 26.78 25.4 19.53 KM Plot
PCPG rs62070325 chr16:89583189 C/T 0.000192 177 26.78 25.4 19.53 KM Plot
PCPG rs62070326 chr16:89583578 G/A 0.000192 177 26.78 25.4 19.53 KM Plot